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Amigo Gene Ontology software
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Amigo Gene Ontology

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Released: December 19, 2012  |  Added: December 19, 2012 | Visits: 327

Gene Ontology The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.



Platforms: Windows, Mac, Linux

License: Freeware Size: 44.5 MB Download (29): Gene Ontology Download

Added: August 24, 2013 | Visits: 192

TranscriptomeBrowser Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...).





Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 838 B Download (16): TranscriptomeBrowser Download

Released: June 24, 2012  |  Added: June 24, 2012 | Visits: 206

BioAGENDA AGENDA (Application for mining Gene Ontology Data)


Platforms: Windows, Mac, Linux

License: Freeware Size: 59.32 KB Download (27): BioAGENDA Download

Added: June 15, 2013 | Visits: 164

GO-Elite GO-Elite is a software tool designed to identify a minimal non-redundant set of Gene Ontology (GO) biological terms and pathways to describe a particular set of input identifiers. This tool calculates over-representation statistics similiar to the program MAPPFinder and subsequently produces...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 15.17 MB Download (18): GO-Elite Download

Added: July 09, 2013 | Visits: 201

ErmineJ ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...


Platforms: Mac

License: Freeware Size: 21.13 MB Download (16): ErmineJ Download

Added: July 03, 2013 | Visits: 288

SBML Reaction Finder Easily find and extract specific chemical reactions from the BioModels database. Features - Autosuggest for Gene Ontology terms - Update feature ensures access to the latest version of BioModels repository


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 11.18 MB Download (31): SBML Reaction Finder Download

Released: July 19, 2012  |  Added: July 19, 2012 | Visits: 247

FastSemSim FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures. The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology


Platforms: Windows

License: Freeware Download (38): FastSemSim Download

Added: April 23, 2010 | Visits: 698

GO::View GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford...


Platforms: *nix

License: Freeware Size: 870.4 KB Download (105): GO::View Download

Released: October 19, 2012  |  Added: October 19, 2012 | Visits: 220

MEFIT MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration. Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions....


Platforms: Windows

License: Freeware Download (49): MEFIT Download

Released: October 12, 2012  |  Added: October 12, 2012 | Visits: 255

Osprey Network Visualization System Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.


Platforms: Windows, Mac, Solaris, Linux

License: Freeware Size: 8.32 MB Download (31): Osprey Network Visualization System Download

Added: September 12, 2013 | Visits: 184

Blast2GO Blast2GO?*A* is an ALL in ONE tool for functional annotation of (novel) sequences and the analysis of annotation data. Main Application Features are: Easy start up and low maintenance. Make sure you have JAVA, download Blast2GO from this site and start using the application. Updates are...


Platforms: Mac

License: Freeware Size: 4.1 KB Download (19): Blast2GO Download

Released: March 27, 2014  |  Added: March 27, 2014 | Visits: 132

EcoCyc EcoCyc is an electronic reference source for E. coli biologists and biologists who work with related microorganisms. EcoCyc Mobile provides a streamlined mobile interaction for EcoCyc, a bioinformatics database that describes the genome and the biochemical machinery of Escherichia coli K-12...


Platforms: iOS

License: Freeware Size: 2.4 MB Download (7): EcoCyc Download

Added: February 01, 2010 | Visits: 741

Bio::Ontology::Relationship Bio::Ontology::Relationship is a relationship for an ontology. SYNOPSIS $rel = Bio::Ontology::Relationship->new( -identifier => "16847", -subject_term => $subj, -object_term => $obj, -predicate_term => $pred ); This is a basic implementation of Bio::Ontology::RelationshipI. The...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (85): Bio::Ontology::Relationship Download

Added: July 21, 2010 | Visits: 544

Bio::Ontology::GOterm Bio::Ontology::GOterm is a representation of GO terms. SYNOPSIS $term = Bio::Ontology::GOterm->new ( -go_id => "GO:0016847", -name => "1-aminocyclopropane-1-carboxylate synthase", -definition => "Catalysis of ...", -is_obsolete => 0, -comment => "" ); $term->add_definition_references(...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (76): Bio::Ontology::GOterm Download

Added: November 21, 2010 | Visits: 445

Bio::Ontology::Ontology Bio::Ontology::Ontology is a standard implementation of an Ontology. SYNOPSIS use Bio::Ontology::Ontology; # create ontology object my $ont = Bio::Ontology::Ontology->new(-name => "OBF"); # add terms, relationships ... my $bp = Bio::Ontology::Term->new(-name => "Bioperl"); my $obf =...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (74): Bio::Ontology::Ontology Download

Added: January 25, 2010 | Visits: 797

GENE Graph Export Engine GENE Graph Export Engine is an advanced XML exporter. GENE Graph Export Engine is a complex convertor/framework for multi-namespace XML transforming and exporting. It is able to convert various XML types including SVG, DocBook, MathML, XSL-FO, and their combinations into a wide area of output...


Platforms: *nix

License: Freeware Size: 1.1 MB Download (76): GENE Graph Export Engine Download

Added: July 15, 2010 | Visits: 490

Bio::Ontology::OntologyEngineI OntologyEngineI is a Perl interface a minimal Ontology implementation should satisfy. This describes the minimal interface an ontology query engine should provide. It intentionally doesnt make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a...


Platforms: *nix

License: Freeware Size: 4.7 MB Download (71): Bio::Ontology::OntologyEngineI Download

Released: March 02, 2011  |  Added: March 15, 2011 | Visits: 580

AMIgo AMIgo is a suite of .NET Components and User Controls that offers a high level access to the Asterisk Manager Interface (AMI). AMIgo offers a high level access to the AMI and allows to remotely monitor, control and setup any Asterisk® open source PBX software system, version 1.2 and up (1.4...


Platforms: Windows, Other

License: Demo Cost: $100.00 USD Size: 2.86 MB Download (104): AMIgo Download

Released: October 24, 2012  |  Added: October 24, 2012 | Visits: 362

Gene Visualizer Gene Visualizer is a small app designed to display an organism's genes visually. The program takes two sets of genes as input. One is a list of an organism's predicted genes, and the other is a list of an organism's known genes. It can be useful to compare how the two lists of genes match up,...


Platforms: Windows

License: Freeware Download (49): Gene Visualizer Download

Released: March 13, 2013  |  Added: March 19, 2013 | Visits: 420

BYclouder Amigo Memory Card Data Recovery The main function is recovery lost files from Amigo Memory Card. Amigo Memory Card Data Recovery ignores the file system layer, direct recovery from the media layer. Even if the file system has been severely damaged or formatted, so it can still work. Detail Information: File...


Platforms: Windows

License: Shareware Cost: $9.95 USD Size: 4.83 MB Download (33): BYclouder Amigo Memory Card Data Recovery Download

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